Index

A

abscissa() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) add_parameter() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) age_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) age_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) age_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) age_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) age_quantile() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) ages_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) ages_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

ages_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) ages_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) as_lambda() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) as_numeric() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) as_numpy() (symbolic_compartmental_model.symbolic_compartmental_model.ContributedTurnovers method) (symbolic_compartmental_model.symbolic_compartmental_model.PoolWeights method) as_symbolic() (symbolic_compartmental_model.symbolic_compartmental_model.ContributedTurnovers method) (symbolic_compartmental_model.symbolic_compartmental_model.PoolWeights method) (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

B

bic (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property)

C

check_param_index() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) check_state_index() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) clone() (symbolic_compartmental_model.symbolic_compartmental_model.ContributedTurnovers method) (symbolic_compartmental_model.symbolic_compartmental_model.PoolWeights method) (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) cm (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute) cohort_mean_residence_time() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

cohort_mean_residence_time_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) CompartmentalModelFittingResults (class in symbolic_compartmental_model.symbolic_compartmental_model) conditional_area_under_curve() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) conditional_expected_decay_rate() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) conditional_mean_residence_time() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) contributed_turnovers (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel property) ContributedTurnovers (class in symbolic_compartmental_model.symbolic_compartmental_model)

D

decay_rate() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) decay_rate_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

delta_aic (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property) display_bounds() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) draw_transition_matrix() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

E

estimate_mean_age_trapezoid() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel static method) estimate_mean_residence_time_trapezoid() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel static method)

expected_decay_rate() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) expected_decay_rate_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

F

f() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) f_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fddot() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fddot_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fdot() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fdot_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

fdot_zero() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fdot_zero_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fit() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fit_multiple_pools() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) fit_whole_system() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) from_sbtab() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel class method)

G

get_param() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) get_param_bounds() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

get_params() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) growth_rate (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel property)

H

has_delayed_input (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property)

has_delayed_input() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

I

is_M_mass_balanced (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property) is_M_mass_balanced() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) is_mass_balanced (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property)

is_mass_balanced() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) is_valid (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults property) is_valid() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

L

lifespan_of_the_living_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) lifespan_of_the_living_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

lifespan_of_the_living_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) lifespan_of_the_living_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

M

M() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) M_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_age() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_age_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_ages() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_ages_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_lifespan_of_the_living() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_lifespan_of_the_living_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_remaining_lifespan_of_the_living() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_remaining_lifespan_of_the_living_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

mean_residence_time() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) mean_residence_time_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) median_age() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) minimize_M_given_s() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) minimize_multiple_pools() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) minimize_s_given_M() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) minimize_whole_system() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) module symbolic_compartmental_model symbolic_compartmental_model.symbolic_compartmental_model

N

n_params (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute) (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel property) n_samples (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

n_states (symbolic_compartmental_model.symbolic_compartmental_model.ContributedTurnovers attribute) (symbolic_compartmental_model.symbolic_compartmental_model.PoolWeights attribute) (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel attribute)

O

observed_pool_weights (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel property)

original_cm (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

P

parameterize() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) pcov (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

plot() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) PoolWeights (class in symbolic_compartmental_model.symbolic_compartmental_model) popt (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

R

reduce() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_of_the_living_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_of_the_living_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_of_the_living_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_of_the_living_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_per_age_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_per_age_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

remaining_lifespan_per_age_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remaining_lifespan_per_age_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) remove_all_parameters() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) residence_time_cdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) residence_time_cdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) residence_time_pdf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) residence_time_pdf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) rss (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

S

s() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) s_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) set_contributed_turnover() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) set_observed_pool_weight() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) set_param_bounds() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) subs() (symbolic_compartmental_model.symbolic_compartmental_model.ContributedTurnovers method) (symbolic_compartmental_model.symbolic_compartmental_model.PoolWeights method)

symbolic_compartmental_model module symbolic_compartmental_model.symbolic_compartmental_model module SymbolicCompartmentalModel (class in symbolic_compartmental_model.symbolic_compartmental_model)

T

tdata (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)

to_sbtab() (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults method)

V

vf() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vf_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vfddot() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vfddot_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

vfdot() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vfdot_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vfdot_zero() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method) vfdot_zero_sympy() (symbolic_compartmental_model.symbolic_compartmental_model.SymbolicCompartmentalModel method)

Y

ydata (symbolic_compartmental_model.symbolic_compartmental_model.CompartmentalModelFittingResults attribute)